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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76234594_76235857_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76234594 - 76235857
Intron Length:
1264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTCTTTTAACA
Flanking Amino Acid:
PDNPKGLYAEGGCCKLCGSV
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.3
0.75
0.8
80.3
30.3
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
72.5
0.7
1.2
75.92
35.5

Associated Gene:

Gene:
ZCCHC9
Ensembl Gene ID:
ENSAPLG00000005968
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006174
76231690 - 76237148
5459