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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76246457_76247796_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76246457 - 76247796
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATGTATTTAATA
Flanking Amino Acid:
AMLANPMRNQAQIAFIQDVG
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.3
0.79
0.8
83.9
31.1
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
64.9
0.46
1.4
70.39
36.1

Associated Gene:

Gene:
RAD17
Ensembl Gene ID:
ENSAPLG00000006015
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006296
76243186 - 76259194
16009