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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76248813_76249353_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76248813 - 76249353
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TGTACCTTGAGC
Flanking Amino Acid:
TADVLCSNWNSRLVMEEYSA
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
81.7
30
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
75.3
0.57
0.9
73.8
36.2
Minor 5ss
39.7
-1.2
3.4
57.1
40.8
Minor BPS
62.4
0.37
1.7
71.59
39.7

Associated Gene:

Gene:
RAD17
Ensembl Gene ID:
ENSAPLG00000006015
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006296
76243186 - 76259194
16009