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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76249501_76250365_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76249501 - 76250365
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATCTG
5'SS Class:
major
3'SS Sequence:
CCACTTCCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
TTCCTCCCACTT
Flanking Amino Acid:
RRDTLLIQPEVIVEKSHMSG
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
67.7
43.2
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
63
0.29
0.9
58.5
31.5
Minor 5ss
43.3
-0.7
2.9
58.1
46.5
Minor BPS
42.5
-0.4
2
61.67
42.7

Associated Gene:

Gene:
RAD17
Ensembl Gene ID:
ENSAPLG00000006015
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006296
76243186 - 76259194
16009