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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76251812_76253481_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76251812 - 76253481
Intron Length:
1670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTTTCTTTTATT
Flanking Amino Acid:
INSLQFSSMKDFSLEKNFWS
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
81.2
30.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
75.6
0.58
0.9
73
36.4
Minor 5ss
36.4
-1.5
2.8
46.5
41.8
Minor BPS
69.8
0.7
1.5
84.47
36.2

Associated Gene:

Gene:
RAD17
Ensembl Gene ID:
ENSAPLG00000006015
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006296
76243186 - 76259194
16009