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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76257033_76257814_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76257033 - 76257814
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGAGAG
5'SS Class:
major
3'SS Sequence:
CATCTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTTTTCATCT
Flanking Amino Acid:
WVDKYKPETQNDLAVQKKKI
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
0.9
63.8
36.2
Major BPS
100
1.24
0.5
100
0
Major PPT
79.5
0.66
0.9
76.5
37.2
Minor 5ss
30.4
-2.2
3.2
37
47.6
Minor BPS
49.9
0.07
1.8
69.75
41.7

Associated Gene:

Gene:
RAD17
Ensembl Gene ID:
ENSAPLG00000006015
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006296
76243186 - 76259194
16009