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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76260855_76260998_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76260855 - 76260998
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGAGGCTTAGCT
Flanking Amino Acid:
NSFLYDRLESRGYKGKKLQD
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
74
36.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
40.6
-1
2.8
52.4
44.8
Minor BPS
49.1
0.01
2.1
69.58
46.8

Associated Gene:

Gene:
AK6
Ensembl Gene ID:
ENSAPLG00000024406
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046944
76259347 - 76261188
1842