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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76262882_76264474_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76262882 - 76264474
Intron Length:
1593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
ATCAATCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TATCTCATATTC
Flanking Amino Acid:
VTSLTRQKSSESSTEMSNEE
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
70
42.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
65.3
0.35
1
58.8
41
Minor 5ss
34.8
-1.7
3.4
48.3
47.3
Minor BPS
48
-0.1
1.8
61.72
37.5

Associated Gene:

Gene:
CCDC125
Ensembl Gene ID:
ENSAPLG00000006296
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006541
76262165 - 76275313
13149