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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76264534_76265914_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76264534 - 76265914
Intron Length:
1381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTGGCTTTTACC
Flanking Amino Acid:
LKQQLREALEEVEILKVELE
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.1
82.6
29.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.8
0.76
0.9
81.6
35.8
Minor 5ss
32.4
-2
2.5
37
40.2
Minor BPS
59.4
0.28
1.8
69.99
42.1

Associated Gene:

Gene:
CCDC125
Ensembl Gene ID:
ENSAPLG00000006296
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006541
76262165 - 76275313
13149