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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76267606_76270032_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76267606 - 76270032
Intron Length:
2427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAC
5'SS Class:
major
3'SS Sequence:
CTAAATTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTAAATT
Flanking Amino Acid:
IEDTWTEKYDRIYCENAALK
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76
33.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.8
0.51
1
65.9
40.2
Minor 5ss
42.2
-0.9
2.5
54
43.3
Minor BPS
74.8
0.86
1.6
91.07
32.9

Associated Gene:

Gene:
CCDC125
Ensembl Gene ID:
ENSAPLG00000006296
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006541
76262165 - 76275313
13149