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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76271145_76271780_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76271145 - 76271780
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTTGGATTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TGATACTTAACC
Flanking Amino Acid:
SDITDITGLELAVLGACTCN
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
78.2
36.3
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
69.9
0.45
1.1
72.4
41.9
Minor 5ss
37.8
-1.4
2.7
44.3
36.8
Minor BPS
73.2
0.71
1.5
77.7
37.2

Associated Gene:

Gene:
CCDC125
Ensembl Gene ID:
ENSAPLG00000006296
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006541
76262165 - 76275313
13149