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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76273325_76274702_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76273325 - 76274702
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTGGG
5'SS Class:
major
3'SS Sequence:
TACTTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTCCATAATT
Flanking Amino Acid:
FINWKRLKEDGSVKLQGNKN
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.2
59.8
45.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
77.9
0.63
0.7
77.4
31
Minor 5ss
37.8
-1.4
3.2
46.4
44.2
Minor BPS
76.7
0.92
1.5
91.68
30.7

Associated Gene:

Gene:
CCDC125
Ensembl Gene ID:
ENSAPLG00000006296
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006541
76262165 - 76275313
13149