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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76274837_76274963_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76274837 - 76274963
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTAGTTTT
5'SS Class:
major
3'SS Sequence:
AATCAACATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTAAATCAACA
Flanking Amino Acid:
HEILKILIDLINDKEEALAH
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
81.7
32.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
61.4
0.26
1
52.8
40.9
Minor 5ss
42.6
-0.8
2.8
57.1
41.4
Minor BPS
50
-0
2
71.43
39.7

Associated Gene:

Gene:
CCDC125
Ensembl Gene ID:
ENSAPLG00000006296
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006541
76262165 - 76275313
13149
Gene:
Ensembl Gene ID:
ENSAPLG00000006547
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006813
76274703 - 76306236
31534