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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76285500_76289280_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76285500 - 76289280
Intron Length:
3781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
TAATGCTTAATT
Flanking Amino Acid:
RRHHCRACGKVFCGACCKRK
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
80.8
0.69
0.8
80.8
31.3
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
69.2
0.68
1.7
82.12
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006547
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006813
76274703 - 76306236
31534