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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76290335_76291130_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76290335 - 76291130
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAA
5'SS Class:
strong_major
3'SS Sequence:
CAACCTATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTTTTCTCAACC
Flanking Amino Acid:
VSVLKQPGIEGLCPKEQRRV
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.9
34.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
60.2
0.23
0.9
51.2
37.4
Minor 5ss
49.2
-0
2.5
63.9
47.7
Minor BPS
71.7
0.66
1.5
79.33
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006547
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006813
76274703 - 76306236
31534