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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76294874_76295394_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76294874 - 76295394
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTC
5'SS Class:
strong_major
3'SS Sequence:
GATGTTTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGACATTGAACT
Flanking Amino Acid:
LLLAVGEKGKDPLVEEHPSH
Intron Amino Acid Position:
1004

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.4
30.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
69.3
0.43
1
66.9
43.9
Minor 5ss
41.9
-0.9
3.2
59
45.7
Minor BPS
51.7
0.13
1.6
69.65
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006547
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006813
76274703 - 76306236
31534