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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76297863_76300536_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76297863 - 76300536
Intron Length:
2674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TTGTCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TGTAAGTTAACA
Flanking Amino Acid:
IGHTVMNLLVDLRNYQYTLH
Intron Amino Acid Position:
1200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
77.8
31.2
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
78.8
0.65
0.9
77.4
36.9
Minor 5ss
34.5
-1.8
2.9
48.3
41.8
Minor BPS
51.7
0.05
2.3
70.25
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006547
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006813
76274703 - 76306236
31534