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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76301620_76302819_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76301620 - 76302819
Intron Length:
1200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CTACTTTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTTTTCTACTT
Flanking Amino Acid:
ANSATEHPRKVTGASFVVFN
Intron Amino Acid Position:
1285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
79.9
0.67
0.8
73
37.1
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
54.5
0.22
1.9
79.49
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006547
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006813
76274703 - 76306236
31534