About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76303687_76304522_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76303687 - 76304522
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATGTA
5'SS Class:
major
3'SS Sequence:
TTATCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTTGTAATT
Flanking Amino Acid:
WVENEEKTNKGILSPVDGKA
Intron Amino Acid Position:
1366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
74.8
35.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
81.3
0.71
0.8
76.5
31.9
Minor 5ss
35.2
-1.7
3.4
40.2
46
Minor BPS
65
0.55
2
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006547
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006813
76274703 - 76306236
31534