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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76313009_76314672_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76313009 - 76314672
Intron Length:
1664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGTA
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTAAAT
Flanking Amino Acid:
TGWHPDQQNKGYDWTMVKEM
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
75.5
34.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.7
0.53
0.9
68.5
37.3
Minor 5ss
32.2
-2
3.7
46.2
49.1
Minor BPS
70.8
0.73
1.3
85.51
34.3

Associated Gene:

Gene:
FAM151B
Ensembl Gene ID:
ENSAPLG00000026983
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034049
76307890 - 76318523
10634