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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76314809_76317273_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76314809 - 76317273
Intron Length:
2465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCTAT
U12 Branch Point Sequence:
TTTTTTTTTATA
Flanking Amino Acid:
ELCWLIQQSDRYSLTIWTGK
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
61.2
0.28
1.4
60.7
45.4
Major PPT
94.7
1.01
0.5
91.9
19.2
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
66.5
0.51
1.5
77.98
32.4

Associated Gene:

Gene:
FAM151B
Ensembl Gene ID:
ENSAPLG00000026983
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034049
76307890 - 76318523
10634