About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76358209_76359110_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76358209 - 76359110
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTGGTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GGTCCCTTAATA
Flanking Amino Acid:
RVNIVLSRELKETPEGAHYL
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
77.2
37.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
76
0.59
0.9
69.4
41.7
Minor 5ss
47.1
-0.3
2.5
59.8
38.9
Minor BPS
74
0.75
1.2
74.91
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007336
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007626
76346516 - 76362588
16073