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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76363248_76364264_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76363248 - 76364264
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTACTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTATTTTTACT
Flanking Amino Acid:
IFNTLKAQGKKEPQKCEKPR
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
73.9
33
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72.7
0.51
1.1
73.6
35.3
Minor 5ss
35.8
-1.6
2.8
40.4
40
Minor BPS
59.1
0.37
1.6
76.95
39.3

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263