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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76364489_76367813_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76364489 - 76367813
Intron Length:
3325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGATTCTTAACT
Flanking Amino Acid:
GDTSPKVAQKEESRCDLSQF
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.2
38.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
89.5
0.89
0.7
84.1
29.7
Minor 5ss
34
-1.8
2.9
42.9
44
Minor BPS
82.5
1.1
1
89.57
34.2

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263