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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76368018_76369409_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76368018 - 76369409
Intron Length:
1392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTTTCTTGTATG
Flanking Amino Acid:
KYRFFGEDAEIAAKELNIYC
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
79
0.65
1
73.2
41.7
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
55.5
0.03
1.9
67.79
40.1

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263