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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76369527_76370304_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76369527 - 76370304
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCTCT
5'SS Class:
major
3'SS Sequence:
TGTGTGCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGTTTCTTCACT
Flanking Amino Acid:
VRRLVAKGYKVGVIKQMETA
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
70.3
36.3
Major BPS
77.5
0.68
1
79.6
33
Major PPT
70.7
0.47
0.9
66.9
40.5
Minor 5ss
41.1
-1
3
57.2
47
Minor BPS
72.3
0.78
1.7
88.23
36.9

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263