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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76370423_76371684_F

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
76370423 - 76371684
Intron Length:
1262

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
AAG|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TAACACTTGATAC|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
LYTKSTLIGEDVNPLLKLDD
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
38.4
-0.7
3.5
62.3
44.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
35.9
-0.8
3.1
46.5
40.7
Minor 5ss
100
1.66
0.5
100
0
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263