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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76371831_76372830_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76371831 - 76372830
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTGACA
Flanking Amino Acid:
RKGDILIGIMAIQPTTGEVV
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.9
0.74
1
80.1
37.1
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
73.1
0.72
1.4
83.34
30.2

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263