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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76408200_76408825_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76408200 - 76408825
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
MKNLEILQNQTDMKTKGSLL
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.6
0.76
0.8
82.5
33.8
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263