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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76408936_76419309_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76408936 - 76419309
Intron Length:
10374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGACAT
5'SS Class:
major
3'SS Sequence:
TGTTGTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GTTTTATTCATT
Flanking Amino Acid:
KWVTQPLMKSSEINARLDAV
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
72.8
38.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.2
0.75
0.9
76.5
37.7
Minor 5ss
30
-2.3
3
39.6
45.8
Minor BPS
53.5
0.19
2
77.3
39.4

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263