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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76431450_76434644_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76431450 - 76434644
Intron Length:
3195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTGTTTATTT
Flanking Amino Acid:
AEYVTVSGQEFLIEVKNSHM
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.4
0.66
0.8
78.1
35
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
53.6
0.19
2
74.81
43.2

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263