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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76434710_76435945_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76434710 - 76435945
Intron Length:
1236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTTCTCTTATCT
Flanking Amino Acid:
CVPSSWVMVSSTKAVSRFHS
Intron Amino Acid Position:
729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
85.6
0.8
0.8
77.2
36.8
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
72.3
0.78
1.5
89.15
35.3

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263