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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76439116_76442778_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76439116 - 76442778
Intron Length:
3663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGAAATTAATG
Flanking Amino Acid:
AQVAKQGDYCRPVVQDNRQE
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
79.8
35.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
91.4
0.93
0.6
87.5
22.7
Minor 5ss
41.1
-1
2.9
57.5
46.8
Minor BPS
49.3
-0.1
1.9
58.51
43

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263