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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76446437_76466593_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76446437 - 76466593
Intron Length:
20157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
TATCCCAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTGAACTTAATA
Flanking Amino Acid:
TIGVVDGIFTRMGAADNIYK
Intron Amino Acid Position:
895

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
70.2
0.46
1
63.7
36.7
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
65.9
0.5
1.5
73.21
38.6

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263