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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76466781_76466994_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76466781 - 76466994
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCATTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
AAAAAATTAAAA
Flanking Amino Acid:
YATLEHFITDVESLTLFVTH
Intron Amino Acid Position:
958

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
27.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
77.9
0.63
0.9
72
37.8
Minor 5ss
36.8
-1.5
3.4
53.7
43.8
Minor BPS
45.3
-0.3
1.8
53.28
37.1

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263