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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76469924_76472904_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76469924 - 76472904
Intron Length:
2981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAAAA
5'SS Class:
major
3'SS Sequence:
TCCCCCCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTGACTAATT
Flanking Amino Acid:
KELERLVNMKRKTLKSFAEV
Intron Amino Acid Position:
1059

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
76.9
33.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
73.6
0.53
0.8
64.7
30.8
Minor 5ss
28.2
-2.5
2.7
31.6
42.2
Minor BPS
51.2
0.12
2.3
81.93
39.6

Associated Gene:

Gene:
MSH3
Ensembl Gene ID:
ENSAPLG00000007056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007394
76362751 - 76473013
110263