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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76543296_76554498_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76543296 - 76554498
Intron Length:
11203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTACTAAATT
Flanking Amino Acid:
DEWVEAIHQASYSDILIERE
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.8
31.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
89.8
0.9
0.6
89.2
19.6
Minor 5ss
39.9
-1.1
2.8
51.4
45.5
Minor BPS
68.7
0.67
1.8
88.84
36.2

Associated Gene:

Gene:
RASGRF2
Ensembl Gene ID:
ENSAPLG00000006824
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030089
76500680 - 76634618
133939
ENSAPLT00000007108
76500680 - 76635422
134743