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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76554647_76555289_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76554647 - 76555289
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATCATTTAATG
Flanking Amino Acid:
DTEIERLKSEIIALNKTKER
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.5
30.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.1
0.75
1
84.6
36
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
54.7
0.01
1.5
57.61
37.8

Associated Gene:

Gene:
RASGRF2
Ensembl Gene ID:
ENSAPLG00000006824
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030089
76500680 - 76634618
133939
ENSAPLT00000007108
76500680 - 76635422
134743