About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76573384_76574238_F


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
76573384 - 76574238

Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACT|GTAAGTTAC

5'SS Class:
major

3'SS Sequence:
TCTCACTGTAAAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAA

U12 Branch Point Sequence:
TTTTTTTTAACT

Flanking Amino Acid:
VEETDAADDDSKSSGQVFGH

Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.4
0.6
1.1
71.7
34.5

Major BPS
87.3
0.93
0.8
78
36.5

Major PPT
62.9
0.29
1.1
62.8
37.3

Minor 5ss
43.4
-0.7
2.8
62.5
42.2

Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
RASGRF2

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

76500680 - 76634618
133939

76500680 - 76635422
134743