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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76654732_76655938_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76654732 - 76655938
Intron Length:
1207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCGCT
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGGTGTTAATTG
Flanking Amino Acid:
VQEKRKLFPPSADYPDLRKH
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
65.8
40.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
94.2
0.99
0.5
93.1
16
Minor 5ss
32.1
-2
3.6
47.1
48.5
Minor BPS
39.9
-0.9
2.1
42.82
43.6

Associated Gene:

Gene:
CKMT2
Ensembl Gene ID:
ENSAPLG00000006717
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006987
76654580 - 76668756
14177