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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76656138_76657342_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76656138 - 76657342
Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGGCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
TCATTCTAGATT
Flanking Amino Acid:
MVAGDEESYEVFAEIFDPVI
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
72
0.5
0.9
64.7
36.6
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
55
0.24
1.7
70.47
41.3

Associated Gene:

Gene:
CKMT2
Ensembl Gene ID:
ENSAPLG00000006717
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006987
76654580 - 76668756
14177