About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76657439_76657888_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
76657439 - 76657888

Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAGGACTG

5'SS Class:
major

3'SS Sequence:
ATTCTTTCCTCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
AATTAAA

U12 Branch Point Sequence:
TGTGAATTAAAA

Flanking Amino Acid:
KHHTDLDASKITQGQFDERY

Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.9
0.71
1
66.4
45.1

Major BPS
73.8
0.59
0.9
74
26.8

Major PPT
82.9
0.74
0.7
81.3
29.9

Minor 5ss
34.2
-1.8
3.5
46.9
48.4

Minor BPS
48.5
-0.1
2
64.08
41.3

Associated Gene:

Gene:
CKMT2

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

76654580 - 76668756
14177