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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76665388_76665760_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76665388 - 76665760
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
AAGGCTGTAAAA
Flanking Amino Acid:
VHVKLPKLSKDPRFPKILEN
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.5
40.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.7
0.83
0.7
85.7
28.9
Minor 5ss
35
-1.7
2.8
43.3
43.8
Minor BPS
44.2
-0.4
2.1
51.64
40.3

Associated Gene:

Gene:
CKMT2
Ensembl Gene ID:
ENSAPLG00000006717
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006987
76654580 - 76668756
14177