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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76954251_76954608_R

Intron Information:

Intron Rank:
144388
Intron Class:
major
Intron Phase:
Intron Coordinates:
76954251 - 76954608
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGAATTA
5'SS Class:
major
3'SS Sequence:
ATTCTTTCAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AATTCTATCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1
67.2
34.4
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
74.1
0.54
0.9
71.5
33.6
Minor 5ss
34
-1.8
3.5
46.4
48.9
Minor BPS
49.5
0.05
2
72.28
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024969
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018128
76954108 - 76954693
586