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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76954254_76956924_R

Intron Information:

Intron Rank:
144389
Intron Class:
major
Intron Phase:
Intron Coordinates:
76954254 - 76956924
Intron Length:
2671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
ATCATTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AATTCTATCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
80.7
0.69
0.8
77.5
36.1
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
49.5
0.05
2
72.28
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024969
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040891
76954108 - 76982801
28694