Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_76957025_76982031_R

Intron Information:

Intron Rank:

144390

Intron Class:

major

Intron Phase:

Intron Coordinates:

76957025 - 76982031

Intron Length:

25007

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTGAT

5'SS Class:

major

3'SS Sequence:

CCTTATTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTCAA

U12 Branch Point Sequence:

TGGACCTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

75.5

34.3

Major BPS

69.1

0.48

0.9

69.6

26.6

Major PPT

86.3

0.82

0.8

83.9

30.7

Minor 5ss

36.5

-1.5

3.4

54.7

43.6

Minor BPS

60.1

0.4

1.7

73.48

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024969

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040891

76954108 - 76982801

28694