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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_77085857_77086772_F

Intron Information:

Intron Rank:
132940
Intron Class:
major
Intron Phase:
Intron Coordinates:
77085857 - 77086772
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGTTTTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82.4
0.73
1
79.9
37.7
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
73.4
0.73
1.1
78.31
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021522
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036459
77043020 - 77086824
43805