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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_774176_774474_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
774176 - 774474
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTCATTT
Flanking Amino Acid:
EKLDSGSARKVPNKGN*
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
100
1.24
0.5
100
0
Major PPT
80.2
0.68
0.8
72.9
37.3
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
51.2
0.11
1.7
72.11
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029296
773253 - 775413
2161