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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_77478700_77483411_F

Intron Information:

Intron Rank:
149189
Intron Class:
major
Intron Phase:
Intron Coordinates:
77478700 - 77483411
Intron Length:
4712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CATACATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75.9
0.58
0.8
74.3
30.7
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
63.3
0.41
1.7
70.94
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030216
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023598
77478598 - 77484484
5887