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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_77676436_77677166_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77676436 - 77677166
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAAAG
5'SS Class:
major
3'SS Sequence:
TCTTCCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TCTTCCCCTACA
Flanking Amino Acid:
CYVSEVQCGSGPTWVPSRCV
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
70.1
35.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
83.4
0.75
0.7
76.9
25.2
Minor 5ss
26.7
-2.7
2.8
30.4
43
Minor BPS
49
-0
2.2
68.78
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031127
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030261
77675410 - 77677634
2225